Illumina maintains a comprehensive curated list of publications containing data generated by Illumina sequencing instruments. 

A new window will open for each category:

      All Sequencing Applications
      ChIP-Seq / Protein-DNA Interactions
      Genome Sequencing (Large Genomes)
      Genome Sequencing (Microbial Genomes)
      Metagenomics - 16S Tag Sequencing
      Metagenomics - Whole Genome
      Metatranscriptomics
      Targeted Resequencing
      Exome Seqeuncing
      Transcriptomics - mRNA
      Transcriptomics - Small RNA